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Crystal structure of uncharacterized protein PH0828 from pyrococcus horikoshii

Analyse Crystal structure of uncharacterized protein PH0828 from pyrococcus horikoshii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1V30
Type: protein
Length: 118 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical UPF0131 protein PH0828
UniProt: O58558
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 22% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical UPF0131 protein PH0828	protein	118	22% helix, 43% strand	O58558

Ligands and binding sites

NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	96	0.72	0.94	18	NHE

Compared structures

1V30 · Crystal Structure Of Uncharacterized Protein PH0828 From Pyrococcus horikoshii · the same entry in another collection · chain A against A, TM-score 1.00
O58558 · AlphaFold monomer V2.0 prediction for putative gamma- glutamylcyclotransferase PH0828… · a predicted model of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O58558
Elsewhere: RCSB PDB 1V30 · PDBe 1V30 · UniProt O58558

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