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Crystal structure of the quorum-sensing protein tram from agrobacterium tumefaciens at 1.65 ang. resolution

Analyse Crystal structure of the quorum-sensing protein tram from agrobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1US6
Type: protein
Length: 189 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcriptional repressor tram
UniProt: Q57471
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 2 distinct chains · 69% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transcriptional repressor tram	protein	90	72% helix, 0% strand	Q57471
B	Transcriptional repressor tram	protein	99	66% helix, 5% strand	Q57471

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	234	0.61	0.81	30	empty

Interfaces

1 interface between chains.

A–B · 1087 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

1US6 · Crystal structure of the quorum-sensing protein TraM from Agrobacterium tumefaciens at… · the same entry in another collection · chain A against A, TM-score 1.00
Q57471 · AlphaFold monomer V2.0 prediction for transcriptional repressor tram (Q57471) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q57471
Elsewhere: RCSB PDB 1US6 · PDBe 1US6 · UniProt Q57471

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