Research workbench

Xylanase XYN10B mutant (E262S) from cellvibrio mixtus in complex with 4-O-methyl glucuronic acid

Analyse Xylanase XYN10B mutant (E262S) from cellvibrio mixtus in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1UQZ
Type: protein
Length: 348 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endoxylanase
EC: 3.2.1.8
UniProt: O68541
Ligands: GCV, XYP, XYS, MG, CL
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endoxylanase (EC 3.2.1.8)	protein	348	43% helix, 18% strand	O68541

Ligands and binding sites

GCV · 4-O-methyl-alpha-D-glucopyranuronic acid · ligand · chains A
XYP · beta-D-xylopyranose · sugar · 5 copies · chains A
XYS · alpha-D-xylopyranose · sugar · chains A
MG · Magnesium ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	280	0.58	0.78	33	XYP, XYS

Compared structures

1UQZ · Xylanase Xyn10B mutant (E262S) from Cellvibrio mixtus in complex with 4-O-methyl… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O68541
Elsewhere: RCSB PDB 1UQZ · PDBe 1UQZ · UniProt O68541

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.