Research workbench
Crystal structure of pseudomonas avirulence protein avrpphb
Analyse Crystal structure of pseudomonas avirulence protein avrpphb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1UKF
- Type
- protein
- Length
- 188 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Avirulence protein AVRPPH3
- UniProt
- Q52430
- Pockets
- 1 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Avirulence protein AVRPPH3 | protein | 188 | 44% helix, 27% strand | Q52430 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 102 | 0.43 | 0.78 | 21 | empty |
Compared structures
- 1UKF · Crystal Structure of Pseudomonas Avirulence Protein AvrPphB · the same entry in another collection · chain A against A, TM-score 1.00
- Q52430 · AlphaFold monomer V2.0 prediction for cysteine protease avirulence protein avrpphb… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q52430
- Elsewhere: RCSB PDB 1UKF · PDBe 1UKF · UniProt Q52430
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