Research workbench
Crystal structure of soybean beta-conglycinin beta homotrimer (I122M/K124W)
Analyse Crystal structure of soybean beta-conglycinin beta homotrimer (I122M/K124W) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1UIJ
- Type
- protein
- Length
- 2,186 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta subunit of beta conglycinin
- UniProt
- P25974
- Pockets
- 19 · best druggability 0.68
Structure
x-ray diffraction · 3 distinct chains · 18% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | Beta subunit of beta conglycinin | protein | 377 | 19% helix, 42% strand | P25974 |
| B, E | Beta subunit of beta conglycinin | protein | 370 | 19% helix, 44% strand | P25974 |
| C, F | Beta subunit of beta conglycinin | protein | 346 | 16% helix, 42% strand | P25974 |
Pockets
19 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 840 | 0.68 | 0.75 | 86 | empty |
| 2 | 855 | 0.67 | 0.74 | 78 | empty |
| 3 | 456 | 0.56 | 0.73 | 56 | empty |
| 4 | 113 | 0.53 | 0.82 | 27 | empty |
| 5 | 116 | 0.50 | 0.80 | 28 | empty |
Interfaces
8 interfaces between chains.
- A–B · 2648 Ų buried · 27 hydrogen bonds · protein-protein
- D–E · 2637 Ų buried · 31 hydrogen bonds · protein-protein
- B–C · 2626 Ų buried · 34 hydrogen bonds · protein-protein
- E–F · 2612 Ų buried · 31 hydrogen bonds · protein-protein
- D–F · 2456 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 1UIJ · Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M/K124W) · the same entry in another collection · chain F against F, TM-score 1.00
- P25974 · AlphaFold monomer V2.0 prediction for beta-conglycinin beta subunit 1 (P25974) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25974
- Elsewhere: RCSB PDB 1UIJ · PDBe 1UIJ · UniProt P25974
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