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Heme-packing motifs revealed by the crystal structure of cytochrome C554 from nitrosomonas europaea
Analyse Heme-packing motifs revealed by the crystal structure of cytochrome C554 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1BVB
- Type
- protein
- Length
- 211 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C-554
- UniProt
- Q57142
- Ligands
- HEM, PO4
- Pockets
- 1 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C-554 | protein | 211 | 35% helix, 4% strand | Q57142 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A
- PO4 · Phosphate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1170 | 0.85 | 0.86 | 102 | HEM |
Modifications
Observed in the structure: 8 cofactor (heme attachment).
Compared structures
- 1BVB · Heme-packing motifs revealed by the crystal structure of cytochrome C554 from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q57142 · AlphaFold monomer V2.0 prediction for cytochrome C-554 (Q57142) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57142
- Elsewhere: RCSB PDB 1BVB · PDBe 1BVB · UniProt Q57142
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