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Crystal structure of TT1020 from thermus thermophilus HB8

Analyse Crystal structure of TT1020 from thermus thermophilus HB8 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1UFL
Type: protein
Length: 303 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nitrogen regulatory protein P-II
UniProt: P83820
Pockets: 6 · best druggability 0.67

Structure

x-ray diffraction · 3 distinct chains · 27% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nitrogen regulatory protein P-II	protein	108	23% helix, 45% strand	P83820
B	Nitrogen regulatory protein P-II	protein	96	33% helix, 36% strand	P83820
C	Nitrogen regulatory protein P-II	protein	99	24% helix, 34% strand	P83820

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	189	0.67	0.86	36	empty
2	134	0.55	0.82	20	empty
3	195	0.52	0.78	29	empty
4	51	0.48	0.86	20	empty
5	60	0.38	0.80	15	empty

Interfaces

3 interfaces between chains.

A–B · 1201 Å² buried · 12 hydrogen bonds · protein-protein
B–C · 1127 Å² buried · 14 hydrogen bonds · protein-protein
A–C · 1110 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

1UFL · Crystal Structure of TT1020 from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P83820
Elsewhere: RCSB PDB 1UFL · PDBe 1UFL · UniProt P83820

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