Research workbench
Crystal structure of the tRNA processing enzyme RNase pH R126A mutant from aquifex aeolicus
Analyse Crystal structure of the tRNA processing enzyme RNase pH R126A mutant from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1UDS
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonuclease pH
- EC
- 2.7.7.56
- UniProt
- O67069
- Ligands
- SO4, PO4
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonuclease pH (EC 2.7.7.56) | protein | 254 | 29% helix, 34% strand | O67069 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 205 | 0.54 | 0.78 | 25 | PO4 |
Compared structures
- 1UDS · Crystal structure of the tRNA processing enzyme RNase PH R126A mutant from Aquifex… · the same entry in another collection · chain A against A, TM-score 1.00
- O67069 · AlphaFold monomer V2.0 prediction for ribonuclease pH (O67069) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O67069
- Elsewhere: RCSB PDB 1UDS · PDBe 1UDS · UniProt O67069
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