Research workbench
Crystal structure of the tRNA processing enzyme RNase pH from aquifex aeolicus
Analyse Crystal structure of the tRNA processing enzyme RNase pH from aquifex aeolicus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1UDN
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonuclease pH
- EC
- 2.7.7.56
- UniProt
- O67069
- Ligands
- SO4, PO4
- Pockets
- 1 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonuclease pH (EC 2.7.7.56) | protein | 254 | 29% helix, 32% strand | O67069 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.52 | 0.79 | 27 | PO4 |
Compared structures
- 1UDN · Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus · the same entry in another collection · chain A against A, TM-score 1.00
- O67069 · AlphaFold monomer V2.0 prediction for ribonuclease pH (O67069) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O67069
- Elsewhere: RCSB PDB 1UDN · PDBe 1UDN · UniProt O67069
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.