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Tena homologue protein from P.HORIKOSHII OT3

Analyse Tena homologue protein from P.HORIKOSHII OT3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1UDD
Type: protein
Length: 856 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcriptional regulator
UniProt: O58873
Pockets: 8 · best druggability 0.81

Structure

x-ray diffraction · 2 distinct chains · 81% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	Transcriptional regulator	protein	215	80% helix, 0% strand	O58873
B, D	Transcriptional regulator	protein	213	83% helix, 0% strand	O58873

Pockets

8 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1041	0.81	0.82	93	empty
2	1095	0.81	0.82	89	empty
3	358	0.75	0.85	28	empty
4	352	0.74	0.85	28	empty
5	373	0.74	0.84	29	empty

Interfaces

6 interfaces between chains.

A–B · 948 Å² buried · 9 hydrogen bonds · protein-protein
C–D · 947 Å² buried · 9 hydrogen bonds · protein-protein
B–D · 798 Å² buried · 2 hydrogen bonds · protein-protein
A–C · 749 Å² buried · 0 hydrogen bonds · protein-protein
A–D · 308 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

1UDD · TenA homologue protein from P.horikoshii OT3 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O58873
Elsewhere: RCSB PDB 1UDD · PDBe 1UDD · UniProt O58873

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