Research workbench
The crystal analysis of beta-keroacyl-[acyl carrier protein] synthase III (FABH)FROM thermus thermophilus.
Analyse The crystal analysis of beta-keroacyl-[acyl carrier protein] synthase III… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1UB7
- Type
- protein
- Length
- 1,284 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-oxoacyl-[acyl-carrier protein] synthase
- EC
- 2.3.1.41
- UniProt
- Q7SI99
- Pockets
- 13 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | 3-oxoacyl-[acyl-carrier protein] synthase (EC 2.3.1.41) | protein | 321 | 36% helix, 27% strand | Q7SI99 |
Ligands and binding sites
- GOL · Glycerol · additive · 10 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
13 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 229 | 0.69 | 0.85 | 33 | empty |
| 2 | 239 | 0.68 | 0.84 | 37 | empty |
| 3 | 229 | 0.65 | 0.83 | 29 | empty |
| 4 | 190 | 0.64 | 0.84 | 37 | empty |
| 5 | 267 | 0.49 | 0.73 | 30 | empty |
Interfaces
3 interfaces between chains.
- C–D · 2536 Ų buried · 34 hydrogen bonds · protein-protein
- A–B · 2489 Ų buried · 35 hydrogen bonds · protein-protein
- A–D · 393 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (oxidation).
Compared structures
- 1UB7 · The Crystal Analysis of Beta-Keroacyl-[Acyl Carrier Protein] Synthase III (FABH)From… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7SI99
- Elsewhere: RCSB PDB 1UB7 · PDBe 1UB7 · UniProt Q7SI99
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.