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Crystal structure of E. COLI arna (pmri) decarboxylase domain

Analyse Crystal structure of E. COLI arna (pmri) decarboxylase domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1U9J
Type: protein
Length: 332 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein yfbg
UniProt: P77398
Ligands: SO4
Pockets: 4 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein yfbg	protein	332	43% helix, 19% strand	P77398

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	502	0.71	0.81	40	empty
2	76	0.38	0.77	15	empty
3	92	0.38	0.76	20	empty
4	64	0.29	0.74	14	empty

Compared structures

1U9J · Crystal Structure of E. coli ArnA (PmrI) Decarboxylase Domain · the same entry in another collection · chain A against A, TM-score 1.00
P77398 · AlphaFold monomer V2.0 prediction for bifunctional polymyxin resistance protein arna… · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P77398
Elsewhere: RCSB PDB 1U9J · PDBe 1U9J · UniProt P77398

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