Research workbench
Crystal structure of PA2721 protein of unknown function from pseudomonas aeruginosa PAO1
Analyse Crystal structure of PA2721 protein of unknown function from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1U69
- Type
- protein
- Length
- 607 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- Q9I0C1
- Pockets
- 4 · best druggability 0.84
Structure
x-ray diffraction · 3 distinct chains · 34% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hypothetical protein | protein | 156 | 32% helix, 32% strand | Q9I0C1 |
| C | Hypothetical protein | protein | 148 | 36% helix, 32% strand | Q9I0C1 |
| D | Hypothetical protein | protein | 147 | 34% helix, 32% strand | Q9I0C1 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1045 | 0.84 | 0.85 | 106 | empty |
| 2 | 287 | 0.73 | 0.86 | 41 | empty |
| 3 | 354 | 0.72 | 0.83 | 41 | empty |
| 4 | 52 | 0.30 | 0.76 | 12 | empty |
Interfaces
6 interfaces between chains.
- A–C · 1909 Ų buried · 30 hydrogen bonds · protein-protein
- B–D · 1874 Ų buried · 29 hydrogen bonds · protein-protein
- A–B · 287 Ų buried · 10 hydrogen bonds · protein-protein
- C–D · 196 Ų buried · 6 hydrogen bonds · protein-protein
- B–C · 71 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 modified (engineered).
Compared structures
- 1U69 · Crystal Structure of PA2721 Protein of Unknown Function from Pseudomonas aeruginosa PAO1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I0C1
- Elsewhere: RCSB PDB 1U69 · PDBe 1U69 · UniProt Q9I0C1
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