Research workbench

Recombinational repair protein reco

Analyse Recombinational repair protein reco in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1U5K
Type: protein
Length: 474 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein
UniProt: Q9RW50
Ligands: ZN
Pockets: 4 · best druggability 0.68

Structure

x-ray diffraction · 2 distinct chains · 37% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein	protein	242	36% helix, 21% strand	Q9RW50
B	Hypothetical protein	protein	232	38% helix, 22% strand	Q9RW50

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	525	0.68	0.78	62	empty
2	76	0.62	0.90	16	empty
3	143	0.50	0.79	20	empty
4	85	0.33	0.74	14	empty

Interfaces

1 interface between chains.

A–B · 966 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

1U5K · Recombinational repair protein RecO · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RW50
Elsewhere: RCSB PDB 1U5K · PDBe 1U5K · UniProt Q9RW50

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