Research workbench
Crystal structure of repeats 15, 16 and 17 of chicken brain alpha spectrin
Analyse Crystal structure of repeats 15, 16 and 17 of chicken brain alpha spectrin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1U4Q
- Type
- protein
- Length
- 635 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spectrin alpha chain, brain
- UniProt
- P07751
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 85% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spectrin alpha chain, brain | protein | 318 | 85% helix, 0% strand | P07751 |
| B | Spectrin alpha chain, brain | protein | 317 | 85% helix, 0% strand | P07751 |
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 425 | 0.70 | 0.81 | 53 | empty |
| 2 | 416 | 0.69 | 0.81 | 47 | empty |
| 3 | 351 | 0.69 | 0.82 | 48 | empty |
| 4 | 296 | 0.55 | 0.76 | 34 | empty |
| 5 | 276 | 0.54 | 0.76 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 1817 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 1U4Q · Crystal Structure of Repeats 15, 16 and 17 of Chicken Brain Alpha Spectrin · the same entry in another collection · chain A against A, TM-score 1.00
- P07751 · AlphaFold monomer V2.0 prediction for spectrin alpha chain, non- erythrocytic 1 (P07751) · a predicted model of the same protein · chain A against A, TM-score 0.80
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07751
- Elsewhere: RCSB PDB 1U4Q · PDBe 1U4Q · UniProt P07751
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