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A sod-like protein from B. subtilis, unstructured in solution, becomes ordered in the crystal: implications for function and for fibrillogenesis

Analyse A sod-like protein from B. subtilis, unstructured in solution, becomes ordered… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1U3N
Type: protein
Length: 162 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical superoxide dismutase-like protein yojm
UniProt: O31851
Pockets: 3 · best druggability 0.64

Structure

solution nmr · 1 distinct chain · 0% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical superoxide dismutase-like protein yojm	protein	162	0% helix, 5% strand	O31851

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	213	0.64	0.83	33	empty
2	195	0.51	0.77	30	empty
3	123	0.41	0.76	23	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

1U3N · A SOD-like protein from B. subtilis, unstructured in solution, becomes ordered in the… · the same entry in another collection · chain A against A, TM-score 1.00
O31851 · AlphaFold monomer V2.0 prediction for superoxide dismutase-like protein yojm (O31851) · a predicted model of the same protein · chain A against A, TM-score 0.44

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O31851
Elsewhere: RCSB PDB 1U3N · PDBe 1U3N · UniProt O31851

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