Research workbench
Crystal structure of protein yfih from shigella flexneri, pfam DUF152
Analyse Crystal structure of protein yfih from shigella flexneri, pfam DUF152 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1U05
- Type
- protein
- Length
- 486 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orf, conserved hypothetical protein
- UniProt
- Q83K13
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Orf, conserved hypothetical protein | protein | 243 | 24% helix, 27% strand | Q83K13 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 997 | 0.80 | 0.81 | 88 | ZN |
| 2 | 191 | 0.50 | 0.76 | 28 | ZN |
Interfaces
1 interface between chains.
- A–B · 599 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 1U05 · Crystal structure of protein yfiH from Shigella flexneri, Pfam DUF152 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q83K13
- Elsewhere: RCSB PDB 1U05 · PDBe 1U05 · UniProt Q83K13
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