Research workbench
Crystal structure of B. subtilis purs P21 crystal form
Analyse Crystal structure of B. subtilis purs P21 crystal form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TWJ
- Type
- protein
- Length
- 319 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical UPF0062 protein yexa
- UniProt
- P12049
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D | Hypothetical UPF0062 protein yexa | protein | 80 | 30% helix, 34% strand | P12049 |
| C | Hypothetical UPF0062 protein yexa | protein | 79 | 32% helix, 35% strand | P12049 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 346 | 0.60 | 0.77 | 51 | empty |
| 2 | 301 | 0.55 | 0.76 | 47 | empty |
Interfaces
4 interfaces between chains.
- C–D · 1457 Ų buried · 20 hydrogen bonds · protein-protein
- A–B · 1443 Ų buried · 27 hydrogen bonds · protein-protein
- B–C · 524 Ų buried · 9 hydrogen bonds · protein-protein
- A–D · 521 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 1TWJ · Crystal Structure of B. subtilis PurS P21 Crystal Form · the same entry in another collection · chain A against A, TM-score 1.00
- P12049 · AlphaFold monomer V2.0 prediction for phosphoribosylformylglycinamidine synthase subunit… · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12049
- Elsewhere: RCSB PDB 1TWJ · PDBe 1TWJ · UniProt P12049
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