Research workbench
J4/5 loop from the candida albicans and candida dubliniensis group I introns
Analyse J4/5 loop from the candida albicans and candida dubliniensis group I introns in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TUT
- Type
- RNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3'; 5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3'
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3' | rna | 11 | — | — |
| B | 5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3' | rna | 11 | — | — |
Interfaces
1 interface between chains.
- A–B · 616 Ų buried · 47 hydrogen bonds · nucleic-nucleic
Compared structures
- 1TUT · J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1TUT · PDBe 1TUT
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