Research workbench
Crystal structure of a putative oxidoreductase (virulence factor mvim homolog)
Analyse Crystal structure of a putative oxidoreductase (virulence factor mvim homolog) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TLT
- Type
- protein
- Length
- 609 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative oxidoreductase (virulence factor mvim homolog)
- UniProt
- P75931
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative oxidoreductase (virulence factor mvim homolog) | protein | 304 | 38% helix, 26% strand | P75931 |
| B | Putative oxidoreductase (virulence factor mvim homolog) | protein | 305 | 36% helix, 28% strand | P75931 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.68 | 0.85 | 39 | empty |
| 2 | 62 | 0.62 | 0.92 | 17 | empty |
| 3 | 297 | 0.59 | 0.78 | 35 | SO4 |
| 4 | 269 | 0.53 | 0.76 | 32 | SO4 |
Interfaces
1 interface between chains.
- A–B · 1389 Ų buried · 31 hydrogen bonds · protein-protein
Compared structures
- 1TLT · Crystal Structure of a Putative Oxidoreductase (VIRULENCE FACTOR mviM HOMOLOG) · the same entry in another collection · chain A against A, TM-score 1.00
- P75931 · AlphaFold monomer V2.0 prediction for putative oxidoreductase ycem (P75931) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P75931
- Elsewhere: RCSB PDB 1TLT · PDBe 1TLT · UniProt P75931
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