Research workbench
Crystal structure of conserved protein of unknown function SSO0622 from sulfolobus solfataricus
Analyse Crystal structure of conserved protein of unknown function SSO0622 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TLJ
- Type
- protein
- Length
- 377 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical UPF0130 protein SSO0622
- UniProt
- Q9UX16
- Ligands
- SO4
- Pockets
- 5 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical UPF0130 protein SSO0622 | protein | 189 | 43% helix, 28% strand | Q9UX16 |
| B | Hypothetical UPF0130 protein SSO0622 | protein | 188 | 43% helix, 27% strand | Q9UX16 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 262 | 0.68 | 0.84 | 51 | SO4 |
| 2 | 171 | 0.51 | 0.78 | 28 | empty |
| 3 | 85 | 0.50 | 0.83 | 23 | empty |
| 4 | 111 | 0.40 | 0.76 | 20 | empty |
| 5 | 78 | 0.35 | 0.76 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1596 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 1TLJ · Crystal Structure of Conserved Protein of Unknown Function SSO0622 from Sulfolobus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UX16 · AlphaFold monomer V2.0 prediction for TRNA(PHE) 7-((3-amino-3-carboxy… · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UX16
- Elsewhere: RCSB PDB 1TLJ · PDBe 1TLJ · UniProt Q9UX16
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