Research workbench

P.SHERMANII SOD(FE+3) fluoride

Analyse P.SHERMANII SOD(FE+3) fluoride in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1BS3
Type: protein
Length: 402 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Superoxide dismutase
EC: 1.15.1.1
UniProt: P80293
Ligands: FE, F
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Superoxide dismutase (EC 1.15.1.1)	protein	201	54% helix, 13% strand	P80293

Ligands and binding sites

FE · Fe (III) ion · metal · 2 copies · chains A, B
F · Fluoride ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	164	0.51	0.79	24	empty
2	162	0.50	0.78	25	empty
3	52	0.29	0.75	16	empty

Interfaces

1 interface between chains.

A–B · 1047 Å² buried · 15 hydrogen bonds · protein-protein

Compared structures

1BS3 · P.SHERMANII SOD(FE+3) fluoride · the same entry in another collection · chain A against A, TM-score 1.00
P80293 · AlphaFold monomer V2.0 prediction for superoxide dismutase [MN/FE] (P80293) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P80293
Elsewhere: RCSB PDB 1BS3 · PDBe 1BS3 · UniProt P80293

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.