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X-ray structure of the sucrose-phosphatase (spp) from synechocystis sp. PCC6803 in a closed conformation
Analyse X-ray structure of the sucrose-phosphatase (spp) from synechocystis sp. PCC6803… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TJ3
- Type
- protein
- Length
- 244 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sucrose-phosphatase
- EC
- 3.1.3.24
- UniProt
- P74325
- Ligands
- MG
- Pockets
- 2 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sucrose-phosphatase (EC 3.1.3.24) | protein | 244 | 43% helix, 23% strand | P74325 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 132 | 0.45 | 0.78 | 22 | MG |
| 2 | 116 | 0.35 | 0.72 | 20 | empty |
Compared structures
- 1TJ3 · X-Ray structure of the Sucrose-Phosphatase (SPP) from Synechocystis sp. PCC6803 in a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P74325
- Elsewhere: RCSB PDB 1TJ3 · PDBe 1TJ3 · UniProt P74325
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