Research workbench
Crystal structure of an archaeal sm protein from sulfolobus solfataricus
Analyse Crystal structure of an archaeal sm protein from sulfolobus solfataricus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TH7
- Type
- protein
- Length
- 1,092 residues
- Chains
- 14
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Small nuclear riboprotein protein
- UniProt
- Q97ZQ0
- Pockets
- 20 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N | Small nuclear riboprotein protein | protein | 78 | 17% helix, 51% strand | Q97ZQ0 |
Pockets
20 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 853 | 0.70 | 0.76 | 85 | empty |
| 2 | 253 | 0.53 | 0.76 | 29 | empty |
| 3 | 231 | 0.50 | 0.75 | 30 | empty |
| 4 | 198 | 0.48 | 0.75 | 25 | empty |
| 5 | 63 | 0.47 | 0.83 | 18 | empty |
Interfaces
30 interfaces between chains.
- D–E · 937 Ų buried · 13 hydrogen bonds · protein-protein
- F–G · 925 Ų buried · 10 hydrogen bonds · protein-protein
- M–N · 887 Ų buried · 13 hydrogen bonds · protein-protein
- B–C · 884 Ų buried · 14 hydrogen bonds · protein-protein
- A–G · 880 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 1TH7 · Crystal Structure of an Archaeal Sm Protein from Sulfolobus solfataricus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97ZQ0
- Elsewhere: RCSB PDB 1TH7 · PDBe 1TH7 · UniProt Q97ZQ0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.