Research workbench
Crystal structure of a rubisco-like protein from chlorobium tepidum
Analyse Crystal structure of a rubisco-like protein from chlorobium tepidum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TEL
- Type
- protein
- Length
- 852 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribulose bisphosphate carboxylase, large subunit
- UniProt
- Q8KBL4
- Pockets
- 5 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribulose bisphosphate carboxylase, large subunit | protein | 424 | 43% helix, 19% strand | Q8KBL4 |
| B | Ribulose bisphosphate carboxylase, large subunit | protein | 428 | 42% helix, 19% strand | Q8KBL4 |
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.77 | 0.99 | 24 | empty |
| 2 | 493 | 0.70 | 0.80 | 45 | empty |
| 3 | 369 | 0.69 | 0.82 | 42 | empty |
| 4 | 179 | 0.65 | 0.85 | 38 | empty |
| 5 | 182 | 0.62 | 0.83 | 39 | empty |
Interfaces
1 interface between chains.
- A–B · 3612 Ų buried · 40 hydrogen bonds · protein-protein
Compared structures
- 1TEL · Crystal structure of a RubisCO-like protein from Chlorobium tepidum · the same entry in another collection · chain A against A, TM-score 1.00
- Q8KBL4 · AlphaFold monomer V2.0 prediction for ribulose bisphosphate carboxylase-like protein… · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8KBL4
- Elsewhere: RCSB PDB 1TEL · PDBe 1TEL · UniProt Q8KBL4
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