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Crystal structure of the spinach plastocyanin mutants G8D/K30C/T69C and K30C/T69C- a study of the effect on crystal packing and thermostability from the introduction of a novel disulfide bond

Analyse Crystal structure of the spinach plastocyanin mutants G8D/K30C/T69C and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1TEF
Type
protein
Length
198 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Plastocyanin, chloroplast
UniProt
P00289
Ligands
CU, CL

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 37% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BPlastocyanin, chloroplastprotein997% helix, 37% strandP00289

Ligands and binding sites

  • CU · Copper (II) ion · metal · 2 copies · chains A, B
  • CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 399 Ų buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

  • 1TEF · Crystal structure of the spinach plastocyanin mutants G8D/K30C/T69C and K30C/T69C- a… · the same entry in another collection · chain A against A, TM-score 1.00
  • P00289 · AlphaFold monomer V2.0 prediction for plastocyanin, chloroplastic (P00289) · a predicted model of the same protein · chain A against A, TM-score 0.98

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