Research workbench
Structural analysis of degs, a stress sensor of the bacterial periplasm
Analyse Structural analysis of degs, a stress sensor of the bacterial periplasm in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TE0
- Type
- protein
- Length
- 636 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protease degs
- EC
- 3.4.21.-
- UniProt
- P31137
- Pockets
- 3 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Protease degs (EC 3.4.21.-) | protein | 318 | 13% helix, 35% strand | P31137 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1052 | 0.77 | 0.79 | 127 | empty |
| 2 | 155 | 0.63 | 0.85 | 20 | empty |
| 3 | 141 | 0.61 | 0.84 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 742 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 1TE0 · Structural analysis of DegS, a stress sensor of the bacterial periplasm · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31137
- Elsewhere: RCSB PDB 1TE0 · PDBe 1TE0 · UniProt P31137
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