Research workbench
NMR solution structure of the carnobacteriocin B2 immunity protein
Analyse NMR solution structure of the carnobacteriocin B2 immunity protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TDP
- Type
- protein
- Length
- 111 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carnobacteriocin B2 immunity protein
- UniProt
- P38582
- Pockets
- 2 · best druggability 0.47
Structure
solution nmr · 1 distinct chain · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carnobacteriocin B2 immunity protein | protein | 111 | 66% helix, 0% strand | P38582 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.47 | 0.83 | 16 | empty |
| 2 | 56 | 0.46 | 0.84 | 13 | empty |
Compared structures
- 1TDP · NMR solution structure of the carnobacteriocin B2 immunity protein · the same entry in another collection · chain A against A, TM-score 1.00
- P38582 · AlphaFold monomer V2.0 prediction for putative carnobacteriocin-B2 immunity protein… · a predicted model of the same protein · chain A against A, TM-score 0.77
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38582
- Elsewhere: RCSB PDB 1TDP · PDBe 1TDP · UniProt P38582
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