Research workbench
Crystal structure of VSHP_BPP21 in space group C2
Analyse Crystal structure of VSHP_BPP21 in space group C2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TD3
- Type
- protein
- Length
- 309 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Head decoration protein
- UniProt
- P36275
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Head decoration protein | protein | 103 | 8% helix, 32% strand | P36275 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 519 | 0.69 | 0.79 | 45 | empty |
| 2 | 135 | 0.68 | 0.89 | 23 | empty |
Interfaces
3 interfaces between chains.
- A–C · 654 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 651 Ų buried · 10 hydrogen bonds · protein-protein
- A–B · 645 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 1TD3 · Crystal structure of VSHP_BPP21 in space group C2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P36275
- Elsewhere: RCSB PDB 1TD3 · PDBe 1TD3 · UniProt P36275
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