Research workbench
Crystal structure of protein EF3133 from enterococcus faecalis V583, pfam DUF984
Analyse Crystal structure of protein EF3133 from enterococcus faecalis V583, pfam DUF984 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1T62
- Type
- protein
- Length
- 316 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Conserved hypothetical protein
- UniProt
- Q82ZD1
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Conserved hypothetical protein | protein | 153 | 34% helix, 25% strand | Q82ZD1 |
| B | Conserved hypothetical protein | protein | 163 | 39% helix, 25% strand | Q82ZD1 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 323 | 0.71 | 0.84 | 47 | empty |
| 2 | 230 | 0.62 | 0.82 | 42 | empty |
| 3 | 59 | 0.35 | 0.78 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1847 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 1T62 · Crystal structure of protein EF3133 from Enterococcus faecalis V583, Pfam DUF984 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q82ZD1
- Elsewhere: RCSB PDB 1T62 · PDBe 1T62 · UniProt Q82ZD1
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