Research workbench
The crystal structure of mucosal addressin cell adhesion molecule-1 (madcam-1)
Analyse The crystal structure of mucosal addressin cell adhesion molecule-1 (madcam-1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1BQS
- Type
- protein
- Length
- 209 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (mucosal addressin cell adhesion molecule-1)
- UniProt
- Q13477
- Ligands
- NAG
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 1 distinct chain · 1% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (mucosal addressin cell adhesion molecule-1) | protein | 209 | 1% helix, 54% strand | Q13477 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.29 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 3 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 1BQS · The crystal structure of mucosal addressin cell adhesion molecule-1 (madcam-1) · the same entry in another collection · chain A against A, TM-score 1.00
- Q13477 · AlphaFold monomer V2.0 prediction for mucosal addressin cell adhesion molecule 1 (Q13477) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13477
- Elsewhere: RCSB PDB 1BQS · PDBe 1BQS · UniProt Q13477
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