Research workbench
Human heme oxygenase oxidation of alpha- and gamma-meso- phenylhemes
Analyse Human heme oxygenase oxidation of alpha- and gamma-meso- phenylhemes in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1T5P
- Type
- protein
- Length
- 401 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heme oxygenase 1
- EC
- 1.14.99.3
- UniProt
- P09601
- Ligands
- 1FH
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 73% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heme oxygenase 1 (EC 1.14.99.3) | protein | 203 | 71% helix, 0% strand | P09601 |
| B | Heme oxygenase 1 (EC 1.14.99.3) | protein | 198 | 75% helix, 0% strand | P09601 |
Ligands and binding sites
- 1FH · 12-phenylheme · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 563 | 0.69 | 0.78 | 46 | 1FH |
| 2 | 602 | 0.68 | 0.77 | 41 | empty |
| 3 | 353 | 0.58 | 0.76 | 40 | 1FH |
Interfaces
1 interface between chains.
- A–B · 231 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09601
- Elsewhere: RCSB PDB 1T5P · PDBe 1T5P · UniProt P09601
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