Research workbench
The structure of the D-glucarate dehydratase protein from pseudomonas putida
Analyse The structure of the D-glucarate dehydratase protein from pseudomonas putida in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1BQG
- Type
- protein
- Length
- 399 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-glucarate dehydratase
- EC
- 4.2.1.40
- UniProt
- P42206
- Pockets
- 3 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-glucarate dehydratase (EC 4.2.1.40) | protein | 399 | 40% helix, 21% strand | P42206 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.36 | 0.74 | 22 | empty |
| 2 | 51 | 0.30 | 0.76 | 17 | empty |
| 3 | 55 | 0.25 | 0.72 | 16 | empty |
Compared structures
- 1BQG · The structure of the D-glucarate dehydratase protein from pseudomonas putida · the same entry in another collection · chain A against A, TM-score 1.00
- P42206 · AlphaFold monomer V2.0 prediction for glucarate dehydratase (P42206) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42206
- Elsewhere: RCSB PDB 1BQG · PDBe 1BQG · UniProt P42206
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