Research workbench
Sindbis virus capsid protein
Analyse Sindbis virus capsid protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1SVP
- Type
- protein
- Length
- 320 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sindbis virus capsid protein
- EC
- 3.4.21.-
- UniProt
- P03316
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Sindbis virus capsid protein (EC 3.4.21.-) | protein | 160 | 6% helix, 46% strand | P03316 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.39 | 0.77 | 18 | empty |
| 2 | 69 | 0.39 | 0.78 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 295 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 1SVP · Sindbis virus capsid protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03316
- Elsewhere: RCSB PDB 1SVP · PDBe 1SVP · UniProt P03316
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