Research workbench
Paramyxovirus SV5 fusion protein core
Analyse Paramyxovirus SV5 fusion protein core in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1SVF
- Type
- protein
- Length
- 199 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (fusion glycoprotein)
- UniProt
- P04849
- Ligands
- CL
Structure
x-ray diffraction · 4 distinct chains · 85% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (fusion glycoprotein) | protein | 64 | 94% helix, 0% strand | P04849 |
| B | Protein (fusion glycoprotein) | protein | 38 | 68% helix, 0% strand | P04849 |
| C | Protein (fusion glycoprotein) | protein | 62 | 94% helix, 0% strand | P04849 |
| D | Protein (fusion glycoprotein) | protein | 35 | 71% helix, 0% strand | P04849 |
Ligands and binding sites
- CL · Chloride ion · ion · 4 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
2 interfaces between chains.
- A–B · 952 Ų buried · 7 hydrogen bonds · protein-protein
- C–D · 950 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 1SVF · Paramyxovirus SV5 fusion protein core · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04849
- Elsewhere: RCSB PDB 1SVF · PDBe 1SVF · UniProt P04849
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