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Crystal structure of yan-SAM

Analyse Crystal structure of yan-SAM in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1SV4
Type: protein
Length: 157 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ets DNA-binding protein pokkuri
UniProt: Q01842
Pockets: 2 · best druggability 0.49

Structure

x-ray diffraction · 2 distinct chains · 62% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ets DNA-binding protein pokkuri	protein	78	62% helix, 0% strand	Q01842
B	Ets DNA-binding protein pokkuri	protein	79	62% helix, 0% strand	Q01842

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	130	0.49	0.79	20	empty
2	77	0.45	0.81	17	empty

Interfaces

1 interface between chains.

A–B · 426 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

1SV4 · Crystal Structure of Yan-SAM · the same entry in another collection · chain B against B, TM-score 1.00
Q01842 · AlphaFold monomer V2.0 prediction for ets DNA-binding protein pokkuri (Q01842) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q01842
Elsewhere: RCSB PDB 1SV4 · PDBe 1SV4 · UniProt Q01842

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