Research workbench

Crystal structure of the apo-ysxc

Analyse Crystal structure of the apo-ysxc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1SUL
Type: protein
Length: 381 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: GTP-binding protein ysxc
UniProt: P38424
Pockets: 3 · best druggability 0.52

Structure

x-ray diffraction · 2 distinct chains · 38% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	GTP-binding protein ysxc	protein	186	39% helix, 23% strand	P38424
B	GTP-binding protein ysxc	protein	195	37% helix, 22% strand	P38424

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	154	0.52	0.80	27	empty
2	84	0.36	0.75	11	empty
3	82	0.34	0.74	20	empty

Interfaces

1 interface between chains.

A–B · 397 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

1SUL · Crystal Structure of the apo-YsxC · the same entry in another collection · chain A against A, TM-score 1.00
P38424 · AlphaFold monomer V2.0 prediction for probable GTP-binding protein engb (P38424) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38424
Elsewhere: RCSB PDB 1SUL · PDBe 1SUL · UniProt P38424

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.