Research workbench

Satellite panicum mosaic virus

Analyse Satellite panicum mosaic virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1STM
Type: protein
Length: 705 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Satellite panicum mosaic virus
UniProt: Q86993
Pockets: 1 · best druggability 0.40

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E	Satellite panicum mosaic virus	protein	141	6% helix, 45% strand	Q86993

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	81	0.40	0.79	35	empty

Interfaces

10 interfaces between chains.

B–C · 620 Å² buried · 8 hydrogen bonds · protein-protein
A–E · 620 Å² buried · 8 hydrogen bonds · protein-protein
D–E · 618 Å² buried · 8 hydrogen bonds · protein-protein
C–D · 616 Å² buried · 8 hydrogen bonds · protein-protein
A–B · 615 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

1STM · Satellite panicum mosaic virus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q86993
Elsewhere: RCSB PDB 1STM · PDBe 1STM · UniProt Q86993

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.