Research workbench
Crystal structure of scytalone dehydratase: a disease determinant of the rice pathogen, magnaporthe grisea
Analyse Crystal structure of scytalone dehydratase: a disease determinant of the rice… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1STD
- Type
- protein
- Length
- 162 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Scytalone dehydratase
- EC
- 4.2.1.94
- UniProt
- P56221
- Ligands
- BFS, SO4
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Scytalone dehydratase (EC 4.2.1.94) | protein | 162 | 31% helix, 43% strand | P56221 |
Ligands and binding sites
- BFS · N-[1-(4-bromophenyl)ethyl]-5-fluoro salicylamide · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 186 | 0.83 | 0.97 | 27 | BFS |
Compared structures
- 1STD · Crystal structure of scytalone dehydratase: a disease determinant of the rice pathogen… · the same entry in another collection · chain A against A, TM-score 1.00
- P56221 · AlphaFold monomer V2.0 prediction for scytalone dehydratase (P56221) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56221
- Elsewhere: RCSB PDB 1STD · PDBe 1STD · UniProt P56221
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