Research workbench
Crystal structure of the putative glyoxylate induced protein from pseudomonas aeruginosa, northeast structural genomics target PAR14
Analyse Crystal structure of the putative glyoxylate induced protein from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1SQ4
- Type
- protein
- Length
- 537 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glyoxylate-induced protein
- UniProt
- Q9I4J5
- Ligands
- SCN
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glyoxylate-induced protein | protein | 270 | 4% helix, 46% strand | Q9I4J5 |
| B | Glyoxylate-induced protein | protein | 267 | 4% helix, 45% strand | Q9I4J5 |
Ligands and binding sites
- SCN · Thiocyanate ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 202 | 0.49 | 0.75 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 487 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 24 modified (engineered).
Compared structures
- 1SQ4 · Crystal Structure of the Putative Glyoxylate Induced Protein from Pseudomonas aeruginosa… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I4J5
- Elsewhere: RCSB PDB 1SQ4 · PDBe 1SQ4 · UniProt Q9I4J5
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