Research workbench
Crystal structure of octaheme cytochrome C from shewanella oneidensis
Analyse Crystal structure of octaheme cytochrome C from shewanella oneidensis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1SP3
- Type
- protein
- Length
- 436 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C, putative
- UniProt
- Q8E9W8
- Ligands
- HEC, SCN
- Pockets
- 4 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C, putative | protein | 436 | 25% helix, 17% strand | Q8E9W8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1031 | 0.87 | 0.88 | 112 | SCN, HEC |
| 2 | 137 | 0.69 | 0.89 | 28 | HEC |
| 3 | 84 | 0.46 | 0.81 | 27 | empty |
| 4 | 51 | 0.33 | 0.78 | 13 | empty |
Modifications
Observed in the structure: 16 cofactor (heme c attachment).
Compared structures
- 1SP3 · Crystal structure of octaheme cytochrome c from Shewanella oneidensis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8E9W8
- Elsewhere: RCSB PDB 1SP3 · PDBe 1SP3 · UniProt Q8E9W8
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