Research workbench
Immobile slipped-loop structure (sls) of DNA homodimer in solution, NMR, 9 structures
Analyse Immobile slipped-loop structure (sls) of DNA homodimer in solution, NMR, 9… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1SLS
- Type
- DNA
- Length
- 50 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oligodeoxyribonucleotide
- Pockets
- 4 · best druggability 0.31
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Oligodeoxyribonucleotide | dna | 25 | — | — |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.31 | 0.74 | 10 | empty |
| 2 | 82 | 0.30 | 0.73 | 10 | empty |
| 3 | 75 | 0.27 | 0.71 | 17 | empty |
| 4 | 78 | 0.27 | 0.71 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 892 Ų buried · 76 hydrogen bonds · nucleic-nucleic
Compared structures
- 1SLS · Immobile slipped-loop structure (sls) of DNA homodimer in solution, NMR, 9 structures · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1SLS · PDBe 1SLS
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