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First stem loop of the SL1 RNA from caenorhabditis elegans, NMR, 16 structures

Analyse First stem loop of the SL1 RNA from caenorhabditis elegans, NMR, 16 structures in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1SLP
Type: RNA
Length: 19 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (5'- R(*UP*UP*AP*CP*CP*CP*AP*AP*GP*UP*UP*UP*GP*AP*GP*GP*UP*AP*A)-3')
Pockets: 1 · best druggability 0.22

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (5'- R(UPUPAPCPCPCPAPAPGPUPUPUPGPAPGPGPUPAP*A)-3')	rna	19	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.22	0.72	11	empty

Compared structures

1SLP · First stem loop of the SL1 RNA from caenorhabditis elegans, NMR, 16 structures · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1SLP · PDBe 1SLP

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