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Three-dimensional structure of a llama vhh domain OE7 binding the cell wall protein MALF1
Analyse Three-dimensional structure of a llama vhh domain OE7 binding the cell wall… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1SJX
- Type
- protein
- Length
- 119 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Immunoglobulin vh domain
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Immunoglobulin vh domain | protein | 119 | 8% helix, 55% strand | — |
Ligands and binding sites
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 93 | 0.51 | 0.83 | 15 | MPD |
| 2 | 68 | 0.37 | 0.78 | 18 | MPD |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1SJX · Three-Dimensional Structure of a Llama VHH Domain OE7 binding the cell wall protein Malf1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1SJX · PDBe 1SJX
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