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Structure of polyketide cyclase snoal

Analyse Structure of polyketide cyclase snoal in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1SJW
Type: protein
Length: 142 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nogalonic acid methyl ester cyclase
UniProt: Q9RN59
Ligands: NGV
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nogalonic acid methyl ester cyclase	protein	142	33% helix, 36% strand	Q9RN59

Ligands and binding sites

NGV · Methyl 5,7-dihydroxy-2-methyl-4,6,11-trioxo-3,4,6,11-tetrahydrotetracene-1-carboxylate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	226	0.69	0.85	29	NGV

Compared structures

1SJW · Structure of polyketide cyclase SnoaL · the same entry in another collection · chain A against A, TM-score 1.00
Q9RN59 · AlphaFold monomer V2.0 prediction for nogalonic acid methyl ester cyclase (Q9RN59) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RN59
Elsewhere: RCSB PDB 1SJW · PDBe 1SJW · UniProt Q9RN59

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