Research workbench
Crystal structure of hypothetical protein yxaf
Analyse Crystal structure of hypothetical protein yxaf in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1SGM
- Type
- protein
- Length
- 368 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative hth-type transcriptional regulator yxaf
- UniProt
- P42105
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative hth-type transcriptional regulator yxaf | protein | 184 | 74% helix, 0% strand | P42105 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 227 | 0.61 | 0.81 | 30 | empty |
| 2 | 114 | 0.51 | 0.81 | 26 | empty |
| 3 | 53 | 0.30 | 0.75 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 1771 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 1SGM · Crystal Structure of Hypothetical Protein YXAF · the same entry in another collection · chain A against A, TM-score 1.00
- P42105 · AlphaFold monomer V2.0 prediction for uncharacterized hth-type transcriptional regulator… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42105
- Elsewhere: RCSB PDB 1SGM · PDBe 1SGM · UniProt P42105
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