Research workbench

The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease

Analyse The three-dimensional structure and X-ray sequence reveal that trichomaglin is… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1SGL
Type: protein
Length: 206 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Trichomaglin
EC: 3.1.-.-
UniProt: P84146
Ligands: SO4
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Trichomaglin (EC 3.1.-.-)	protein	206	33% helix, 21% strand	P84146

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	133	0.52	0.81	25	empty
2	55	0.38	0.80	14	empty

Modifications

Observed in the structure: 7 disulfide (disulfide).

Compared structures

1SGL · The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P84146
Elsewhere: RCSB PDB 1SGL · PDBe 1SGL · UniProt P84146

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.