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Binding of N,N'-diacetylchitobiose to hew lysozyme: a powder diffraction study

Analyse Binding of N,N'-diacetylchitobiose to hew lysozyme: a powder diffraction study in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1SF4
Type: protein
Length: 129 residues
Chains: 1
Method: powder diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysozyme
EC: 3.2.1.17
UniProt: P00698
Ligands: NAG
Pockets: 3 · best druggability 0.79

Structure

powder diffraction · 1 distinct chain · 28% helix, 6% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme (EC 3.2.1.17)	protein	129	28% helix, 6% strand	P00698

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	223	0.79	0.92	28	empty
2	51	0.50	0.87	18	empty
3	70	0.39	0.79	11	NAG

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

1SF4 · Binding of N,N'-diacetylchitobiose to hew lysozyme: a powder diffraction study · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00698
Elsewhere: RCSB PDB 1SF4 · PDBe 1SF4 · UniProt P00698

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