Research workbench
NMR solution structure of a parallel lna quadruplex
Analyse NMR solution structure of a parallel lna quadruplex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1S9L
- Type
- RNA
- Length
- 20 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-((TLN)P*(LCG)P*(LCG)P*(LCG)P*(TLN))-3'
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | 5'-((TLN)P*(LCG)P*(LCG)P*(LCG)P*(TLN))-3' | rna | 5 | — | — |
Interfaces
6 interfaces between chains.
- A–B · 279 Ų buried · 15 hydrogen bonds · nucleic-nucleic
- C–D · 277 Ų buried · 15 hydrogen bonds · nucleic-nucleic
- A–C · 274 Ų buried · 14 hydrogen bonds · nucleic-nucleic
- B–D · 273 Ų buried · 15 hydrogen bonds · nucleic-nucleic
- A–D · 58 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 20 modified (nucleotide modification).
Compared structures
- 1S9L · NMR Solution Structure of a Parallel LNA Quadruplex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1S9L · PDBe 1S9L
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