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Crystal structure analysis of the beta-propeller protein SKI8P

Analyse Crystal structure analysis of the beta-propeller protein SKI8P in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1S4U
Type: protein
Length: 356 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Antiviral protein SKI8
UniProt: Q02793
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	Antiviral protein SKI8	protein	356	5% helix, 51% strand	Q02793

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	710	0.79	0.83	66	empty

Compared structures

1S4U · Crystal Structure analysis of the beta-propeller protein Ski8p · the same entry in another collection · chain X against X, TM-score 1.00
Q02793 · AlphaFold monomer V2.0 prediction for antiviral protein SKI8 (Q02793) · a predicted model of the same protein · chain X against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q02793
Elsewhere: RCSB PDB 1S4U · PDBe 1S4U · UniProt Q02793

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